Publications

22. Schumer, M., Xu, C., Powell, D., Durvasula, A., Skov, L., Holland, D., Blazier, J.C., Sankararaman, S., Andolfatto, P., Rosenthal, G.G.R, Przeworski, M. Natural selection and local recombination rates shape the genome evolution of swordtail hybrids. Science, in press.

21. Rosenthal, G.G.R, Schumer, M., Andolfatto, P. Letter: How the manakin got its crown: A novel trait that is unlikely to cause speciation. PNAS, in press.

20. Schumer, M., Rosenthal, G.G.R., Andolfatto, P. (2018) What do we mean when we talk about hybrid speciation? Heredity doi:10.1038/s41437-017-0036-z.

19. Schumer, M., Powell, D., Cui, R., Delclos, P., Squire, M., Andolfatto, P., Rosenthal, G. (2017). Assortative mating and persistent reproductive isolation in hybrids. PNAS doi: 10.1073/pnas.1711238114.

18. Baker, Z.*, Schumer, M.*, Haba, Y., Holland, C., Rosenthal, G., Przeworski, M. (2017). Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates. eLife. *co-first authorship

17. Cui, R., Delclos, P., Schumer, M., Rosenthal, G. (2017). Early social learning triggers neurogenomic expression changes in a swordtail fish. Proceedings Royal Society B.

16. Schumer, M., Brandvain, Y. (2016). Determining epistatic selection in admixed populations. Molecular Ecology doi: 10.1111/mec.13641.

15. Schumer, M., Cui, R., Powell, D., Rosenthal, G., Andolfatto, P. (2016). Ancient hybridization and genomic stabilization in a swordtail fish. Molecular Ecology doi: 10.1111/mec.13602.

14. Cui, R., Schumer, M., Rosenthal, G. (2016). Admix’em: A flexible framework for forward-time simulations of hybrid populations with selection and mate choice. Bioinformatics doi: 10.1093/bioinformatics/btv700.

13. Schumer, M.*, Cui, R.*, Rosenthal, G., Andolfatto, P. (2015). simMSG: an experimental design tool for high-throughput genotyping of hybrids. Molecular Ecology Resources doi: 10.1111/1755-0998.12434. *co-first authorship

12. Ghosh, R., Bloom, J.S., Mohammadi, A., Schumer, M., Andolfatto, P., Ryu, W., Kruglyak, L. (2015). Genetics of Intra-Species Variation in Avoidance Behavior Induced by a Thermal Stimulus in Caenorhabditis elegans. Genetics doi:10.1534/genetics.115.178491.

11. Schumer, M., Cui, R., Rosenthal, G., Andolfatto, P. (2015). Reproductive isolation of hybrid populations driven by genetic incompatibilities. PLoS Genetics doi:10.1371/journal.pgen.1005041.

10. Schumer, M., Cui, R., Powell, D., Dresner, R., Rosenthal, G., Andolfatto, P. (2014). High-resolution Mapping Reveals Hundreds of Genetic Incompatibilities in Hybridizing Fish Species. eLife doi: http://dx.doi.org/10.7554/eLife.02535.

        Featured in:    Science News; The Naked Scientists podcast

9. Schumer, M., Rosenthal, G., Andolfatto, P. (2014). How common is homoploid hybrid speciation? Evolution doi:10.1111/evo.12399.

8. Culumber, Z. W., Schumer M., Monks S., Tobler M. (2014). Environmental heterogeneity generates opposite gene-by-environment interactions for two fitness-related traits within a population. Evolution doi: 10.1111/evo.12574.

7. Cui, R., Schumer, M., Kruesi, K., Walter, R., Andolfatto, P., Rosenthal, G. (2013). Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes. Evolution 67:2166-2179.

6. Renn, S.C.P. and Schumer, M. (2013). Genetic accommodation and behavioral evolution: insights from genomic studies. Animal Behavior 85: 1012-1022.

         F1000 recommended article

5. Schumer, M., Cui, R., Boussau, B., Walter, W., Rosenthal, G., Andolfatto, P. (2012). An evaluation of the hybrid speciation hypothesis for Xiphophorus clemenciae based on whole genome sequences. Evolution 67: 1155-1168.

4. Zhen, Y., Aardema, M.L., Medina, E.M., Schumer, M., Andolfatto, P. (2012). Parallel molecular evolution in a herbivore community. Science 337:1634-1637.

3. Schumer, M.*, Birger, R.*, Tantipathananandh, C., Aurisano, J., Maggioni, M., Mwangi, P. (2012). Infestation by a Common Parasite is Correlated with Ant Symbiont Identity in a Plant-Ant Mutualism. Biotropica 45: 276-279. *co-first authorship

2. Schumer, M., Krishnakant, K., and Renn, S.C.P. (2011). Comparative gene expression profiles for highly similar aggressive phenotypes in male and female cichlid fishes (Julidochromis). Journal of Experimental Biology 214:3269-3278.

1. Spengler, M., Kuropatwinski, K., Schumer, M. and Antoch, M. (2009). A serine cluster mediates BMAL1-dependent CLOCK phosphorylation and degradation. Cell Cycle 8:24, 4138-4146.

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